| Shadow SpecterSpeed Duel Starter Decks: Match of the Millennium · 09 | Speed Duel Starter Decks: Match of the Millennium | 09 | Common | €0.13 |
| Shadow SpellStarter Deck: Kaiba Evolution · 041 | Starter Deck: Kaiba Evolution | 041 | Super Rare | €0.05 |
| Shadow TamerLegacy of Darkness · 025 | Legacy of Darkness | 025 | Rare | €0.16 |
| Shadow ToonDragons of Legend 2 · 025 | Dragons of Legend 2 | 025 | Super Rare | €1.15 |
| Shadow VampireShadow Specters · 030 | Shadow Specters | 030 | Secret Rare | €0.14 |
| Shafu, the Wheeled MayakashiHidden Summoners · 030 | Hidden Summoners | 030 | Secret Rare | $0.36 |
| Shamanite ShamanknightChaos Origins · 086 | Chaos Origins | 086 | Common | €0.11 |
| Shaman of the Ashened CityLegacy of Destruction · 090 | Legacy of Destruction | 090 | Super Rare | €0.15 |
| Shaman of the TenyiRising Rampage · 044 | Rising Rampage | 044 | Ultra Rare | €0.47 |
| Shamisen Samsara SorrowcatDarkwing Blast · 044 | Darkwing Blast | 044 | Super Rare | €0.19 |
| ShapesisterJudgment of the Light · 079 | Judgment of the Light | 079 | Ultra Rare | €0.14 |
| ShapesnatchPharaonic Guardian · 002 | Pharaonic Guardian | 002 | Common | $0.10 |
| Shard of GreedPhoton Shockwave · 057 | Photon Shockwave | 057 | Secret Rare | €0.18 |
| Shared RideLegacy of the Valiant · 070 | Legacy of the Valiant | 070 | Secret Rare | €0.32 |
| Share the PainMetal Raiders · 140 | Metal Raiders | 140 | Common | €0.16 |
| Shark CaesarJudgment of the Light · 049 | Judgment of the Light | 049 | Common | €0.19 |
| Shark CruiserAncient Prophecy · 028 | Ancient Prophecy | 028 | Common | $0.11 |
| Shark FortressLord of the Tachyon Galaxy · 048 | Lord of the Tachyon Galaxy | 048 | Common | $0.05 |
| SharkrakenLord of the Tachyon Galaxy · 007 | Lord of the Tachyon Galaxy | 007 | Common | €0.10 |
| Shark StickersPhoton Shockwave · 009 | Photon Shockwave | 009 | Common | €0.21 |
| Sharv SargaAge of Overlord · 072 | Age of Overlord | 072 | Common | €0.03 |
| ShatekiMaze of Muertos · 038 | Maze of Muertos | 038 | Rare | $0.08 |
| Shattered AxeEnemy of Justice · 059 | Enemy of Justice | 059 | Common | €0.05 |
| Sheep TokenSan Diego Comic-Con promotional cards · 001 | San Diego Comic-Con promotional cards | 001 | Common | €2.72 |
| Shell KnightGhosts From the Past: The 2nd Haunting · 016 | Ghosts From the Past: The 2nd Haunting | 016 | Ultra Rare | €0.16 |
| Shell of ChaosPhoton Hypernova · 010 | Photon Hypernova | 010 | Common | €0.06 |
| Shelrokket DragonExtreme Force · 007 | Extreme Force | 007 | Rare | €0.07 |
| Shiba-Warrior TaroAnniversary Pack · 008 | Anniversary Pack | 008 | Ultra Rare | $21.91 |
| Shichi-Go-SanBurst Protocol · 080 | Burst Protocol | 080 | Common | €0.03 |
| Shield CrushPremium Pack (TCG) · 007 | Premium Pack (TCG) | 007 | Secret Rare | €0.06 |
| Shield HandlerCybernetic Horizon · 068 | Cybernetic Horizon | 068 | Common | €0.05 |
| Shield of the Millennium DynastyThe Infinite Forbidden · 003 | The Infinite Forbidden | 003 | Ultra Rare | €1.62 |
| Shield SpearTactical Evolution · 074 | Tactical Evolution | 074 | Common | €0.10 |
| Shield & SwordMetal Raiders · 131 | Metal Raiders | 131 | Rare | €0.03 |
| Shield WarriorThe Duelist Genesis · 005 | The Duelist Genesis | 005 | Rare | €0.07 |
| Shield WingAbsolute Powerforce · 095 | Absolute Powerforce | 095 | Secret Rare | €0.14 |
| Shield WormAbsolute Powerforce · 099 | Absolute Powerforce | 099 | Rare | €0.18 |
| Shien's AdvisorExtreme Victory · 029 | Extreme Victory | 029 | Super Rare | $0.11 |
| Shien's Castle of MistStrike of Neos · 047 | Strike of Neos | 047 | Common | €0.15 |
| Shien's DaredevilStorm of Ragnarok · 082 | Storm of Ragnarok | 082 | Rare | €0.14 |
| Shien's DojoExtreme Victory · 057 | Extreme Victory | 057 | Super Rare | €0.14 |
| Shien's FootsoldierStrike of Neos · 014 | Strike of Neos | 014 | Common | €0.12 |
| Shien's SchemeStorm of Ragnarok · 075 | Storm of Ragnarok | 075 | Common | €0.11 |
| Shien's Smoke SignalStorm of Ragnarok · 048 | Storm of Ragnarok | 048 | Rare | €0.15 |
| Shien's SpyCybernetic Revolution · 044 | Cybernetic Revolution | 044 | Common | €0.09 |
| Shien's SquireStorm of Ragnarok · 026 | Storm of Ragnarok | 026 | Common | €0.16 |
| Shif, Fairy of the GhotiPower of the Elements · 087 | Power of the Elements | 087 | Super Rare | €0.28 |
| ShiftPharaoh's Servant · 067 | Pharaoh's Servant | 067 | Rare | €0.04 |
| Shifting ShadowsThe Lost Millennium · 047 | The Lost Millennium | 047 | Common | €0.05 |
| Shiina, Twin Tempests of Celestial ThunderBurst Protocol · 027 | Burst Protocol | 027 | Secret Rare | €7.29 |