| El Shaddoll WindaDuelist Alliance · 048 | Duelist Alliance | 048 | Ultra Rare | $0.13 |
| Elvennotes ~Oracle Alicetea~Unlisted Printings | Unlisted Printings | — | — | — |
| Elvennotes ReginaUnlisted Printings | Unlisted Printings | — | — | — |
| Elzette, Azamina of the White ForestSupreme Darkness · 008 | Supreme Darkness | 008 | Secret Rare | €0.22 |
| Elzette of the White ForestThe Infinite Forbidden · 014 | The Infinite Forbidden | 014 | Secret Rare | €0.25 |
| Embers of the AshenedLegacy of Destruction · 093 | Legacy of Destruction | 093 | Super Rare | €0.14 |
| Emblema OathValiant Smashers · 021 | Valiant Smashers | 021 | Ultra Rare | €9.25 |
| Emblema SalvationThe Infinite Forbidden · 063 | The Infinite Forbidden | 063 | Common | €0.05 |
| Emblem of Dragon DestroyerMagician's Force · 090 | Magician's Force | 090 | Common | €0.02 |
| Emblem of the AwakeningStrike of Neos · 044 | Strike of Neos | 044 | Common | €0.09 |
| Emblem of the Plunder PatrollEternity Code · 089 | Eternity Code | 089 | Ultra Rare | $0.12 |
| Embodiment of ApophisCybernetic Revolution Sneak Peek Participation Card · 003 | Cybernetic Revolution Sneak Peek Participation Card | 003 | Ultra Rare | €0.09 |
| Embrace of the TistinaAge of Overlord · 091 | Age of Overlord | 091 | Super Rare | €0.12 |
| Embryonic BeastUnlisted Printings | Unlisted Printings | — | — | — |
| EMERGENCY!Duelist Nexus · 058 | Duelist Nexus | 058 | Common | €0.05 |
| Emergency ApportPhantom Nightmare · 083 | Phantom Nightmare | 083 | Common | €0.04 |
| Emergency AssistanceAncient Prophecy · 049 | Ancient Prophecy | 049 | Common | €0.10 |
| Emergency ProvisionsLegacy of Darkness · 033 | Legacy of Darkness | 033 | Common | €0.02 |
| Emergency TeleportThe Duelist Genesis · 053 | The Duelist Genesis | 053 | Ultra Rare | €0.10 |
| Emergeroid CallLegendary Duelists · 032 | Legendary Duelists | 032 | Ultra Rare | €0.07 |
| Emerging Emergency Rescute RescueMaximum Crisis: Special Edition · 3 | Maximum Crisis: Special Edition | 3 | Super Rare | €0.06 |
| Emes the InfinityYu-Gi-Oh! Destiny Board Traveler promotional cards · 001 | Yu-Gi-Oh! Destiny Board Traveler promotional cards | 001 | Super Rare | $1.08 |
| Emi BlitzcliqueChaos Origins · 014 | Chaos Origins | 014 | Super Rare | $0.14 |
| Emilia, Dance Priestess of the NekrozBattles of Legend: Monster Mayhem · 025 | Battles of Legend: Monster Mayhem | 025 | Secret Rare | €3.93 |
| Emissaries from DarknessUnlisted Printings | Unlisted Printings | — | — | — |
| Emissary from PandemoniumRaging Battle · 031 | Raging Battle | 031 | Common | €0.14 |
| Emissary from the House of WaxPhantom Nightmare · 030 | Phantom Nightmare | 030 | Super Rare | €0.02 |
| Emissary of Darkness TokenUnlisted Printings | Unlisted Printings | — | — | $1.54 |
| Emissary of the AfterlifeAncient Sanctuary · 076 | Ancient Sanctuary | 076 | Super Rare | €5.01 |
| Emissary of the OasisAncient Sanctuary · 083 | Ancient Sanctuary | 083 | Common | €0.13 |
| Emperor Charles the GreatDuelist Nexus · 048 | Duelist Nexus | 048 | Ultra Rare | $0.35 |
| Emperor Maju GarzettDark Neostorm · 027 | Dark Neostorm | 027 | Common | €0.09 |
| Emperor of LightningYu-Gi-Oh! World Championship 2007 prize cards · 702 | Yu-Gi-Oh! World Championship 2007 prize cards | 702 | Ultra Rare | — |
| Emperor of ProphecyAbyss Rising · 024 | Abyss Rising | 024 | Rare | €0.06 |
| Emperor of the Land and SeaUnlisted Printings | Unlisted Printings | — | — | — |
| Emperor SemRaging Battle · 099 | Raging Battle | 099 | Rare | €0.12 |
| Emperor Tanuki's Critter CountPower of the Elements · 037 | Power of the Elements | 037 | Super Rare | €0.06 |
| EM:P MeowminePhantom Nightmare · 032 | Phantom Nightmare | 032 | Ultra Rare | $0.29 |
| EmpowermentThe Dark Illusion · 094 | The Dark Illusion | 094 | Common | €0.02 |
| Empress JudgeMetal Raiders · 046 | Metal Raiders | 046 | Common | €0.15 |
| Empress MantisLabyrinth of Nightmare · 040 | Labyrinth of Nightmare | 040 | Common | €0.02 |
| Empress of ProphecyAbyss Rising · 047 | Abyss Rising | 047 | Ultra Rare | $0.30 |
| Empty MachineBattles of Legend: Relentless Revenge · 027 | Battles of Legend: Relentless Revenge | 027 | Secret Rare | $2.07 |
| E.M.R.Blazing Vortex · 078 | Blazing Vortex | 078 | Super Rare | €0.04 |
| Enato Enneacraft - "oknirIA"Phantom Revenge · 019 | Phantom Revenge | 019 | Rare | €0.05 |
| Enchanted JavelinPharaoh's Servant · 015 | Pharaoh's Servant | 015 | Common | €0.03 |
| Enchanting Fitting RoomAncient Sanctuary · 093 | Ancient Sanctuary | 093 | Common | €0.08 |
| Enchanting MermaidLegend of Blue Eyes White Dragon · 084 | Legend of Blue Eyes White Dragon | 084 | Common | €0.02 |
| Encode TalkerStructure Deck: Cyberse Link · 041 | Structure Deck: Cyberse Link | 041 | Ultra Rare | €0.04 |
| Endless BondBattles of Legend: Glorious Gallery · 038 | Battles of Legend: Glorious Gallery | 038 | New | €0.07 |