| Endless DecayShonen Jump Vol. 9, Issue 10 promotional card · 056 | Shonen Jump Vol. 9, Issue 10 promotional card | 056 | Ultra Rare | €0.07 |
| Endless Engine Argyro SystemDimension Force · 054 | Dimension Force | 054 | Ultra Rare | €0.06 |
| Endless TrapsSpeed Duel: Battle City Box · 10 | Speed Duel: Battle City Box | 10 | Common | €0.05 |
| End of the LineBattle of Chaos · 080 | Battle of Chaos | 080 | Common | €0.07 |
| End of the WorldShadow of Infinity · 046 | Shadow of Infinity | 046 | Common | €0.30 |
| Endymion EmpireBattles of Legend: Glorious Gallery · 043 | Battles of Legend: Glorious Gallery | 043 | Secret Rare | — |
| Endymion's LabStructure Deck: Order of the Spellcasters · 023 | Structure Deck: Order of the Spellcasters | 023 | Common | €0.16 |
| Endymion, the Crescent MagistusDoom of Dimensions · 099 | Doom of Dimensions | 099 | Super Rare | €0.20 |
| Endymion, the Magistus of MasteryGenesis Impact · 004 | Genesis Impact | 004 | Rare | €0.10 |
| Endymion, the Master MagicianSpellcaster's Command Structure Deck · 001 | Spellcaster's Command Structure Deck | 001 | Ultra Rare | €0.13 |
| Endymion, the Mighty Master of MagicStructure Deck: Order of the Spellcasters · 001 | Structure Deck: Order of the Spellcasters | 001 | Ultra Rare | €0.47 |
| Enemy ControllerAncient Sanctuary · 037 | Ancient Sanctuary | 037 | Ultra Rare | €0.07 |
| EN - Engage Neo SpacePower of the Elements · 051 | Power of the Elements | 051 | Super Rare | €0.23 |
| Energizing ElementsSpeed Duel GX: Duel Academy Box · 17 | Speed Duel GX: Duel Academy Box | 17 | Common | $0.11 |
| Energy-Absorbing MonolithGladiator's Assault · 075 | Gladiator's Assault | 075 | Super Rare | $0.28 |
| Energy BraveryStardust Overdrive · 033 | Stardust Overdrive | 033 | Common | €0.05 |
| Energy DrainInvasion of Chaos · 055 | Invasion of Chaos | 055 | Common | €0.05 |
| Enervating MistSoul of the Duelist · 053 | Soul of the Duelist | 053 | Rare | €0.12 |
| Engine TokenUnlisted Printings | Unlisted Printings | — | — | — |
| Engraver of the MarkDimension of Chaos: Special Edition · 3 | Dimension of Chaos: Special Edition | 3 | Super Rare | €0.05 |
| Enigmaster PackbitPhantom Nightmare · 042 | Phantom Nightmare | 042 | Secret Rare | $1.03 |
| Enishi, Shien's ChancellorGladiator's Assault · 032 | Gladiator's Assault | 032 | Ultra Rare | $0.14 |
| EnlightenmentStardust Overdrive · 065 | Stardust Overdrive | 065 | Common | €0.08 |
| Enlightenment DragonLegacy of Destruction · 038 | Legacy of Destruction | 038 | Super Rare | €0.17 |
| Enlightenment PaladinBreakers of Shadow · 047 | Breakers of Shadow | 047 | Ultra Rare | €0.31 |
| Enlilgirsu, the Orcust Mekk-KnightBattles of Legend: Monster Mayhem · 053 | Battles of Legend: Monster Mayhem | 053 | Ultra Rare | €0.65 |
| Enma's JudgmentDuel Overload · 042 | Duel Overload | 042 | Ultra Rare | €0.10 |
| Enneacraft - Aiza.LEONPhantom Revenge · 020 | Phantom Revenge | 020 | Super Rare | €0.19 |
| Enneacraft - Archa.TAILPhantom Revenge · 023 | Phantom Revenge | 023 | Super Rare | €0.17 |
| Enneacraft - Asta.PIXEAPhantom Revenge · 021 | Phantom Revenge | 021 | Rare | €0.11 |
| Enneacraft - Atil.SPIABlazing Dominion · 020 | Blazing Dominion | 020 | Super Rare | $0.20 |
| Enneacraft - Atori.MARPhantom Revenge · 022 | Phantom Revenge | 022 | Ultra Rare | $3.97 |
| Enneacraft ReleasePhantom Revenge · 025 | Phantom Revenge | 025 | Super Rare | €0.16 |
| Enneacraft ResetBlazing Dominion · 065 | Blazing Dominion | 065 | Common | €0.11 |
| Enneacraft ReverthPhantom Revenge · 026 | Phantom Revenge | 026 | Rare | €0.07 |
| EnneapolisPhantom Revenge · 024 | Phantom Revenge | 024 | Super Rare | €0.18 |
| Enraged Battle OxInvasion of Chaos · 070 | Invasion of Chaos | 070 | Rare | $0.10 |
| Enraged Muka MukaSoul of the Duelist · 031 | Soul of the Duelist | 031 | Common | €0.06 |
| EN ShuffleBattles of Legend: Crystal Revenge · 008 | Battles of Legend: Crystal Revenge | 008 | Secret Rare | $2.81 |
| Envoy of ChaosRaging Tempest · 025 | Raging Tempest | 025 | Rare | €0.15 |
| EN WavePower of the Elements · 053 | Power of the Elements | 053 | Super Rare | €0.19 |
| Epigonen, the Impersonation InvaderBattle of Chaos · 026 | Battle of Chaos | 026 | Super Rare | €0.11 |
| Epsilon The Magnet WarriorBattle of Chaos · 020 | Battle of Chaos | 020 | Common | €0.07 |
| Epurrely BeautyAmazing Defenders · 015 | Amazing Defenders | 015 | Super Rare | €0.24 |
| Epurrely HappinessAmazing Defenders · 014 | Amazing Defenders | 014 | Rare | €0.08 |
| Epurrely NoirDuelist Nexus · 044 | Duelist Nexus | 044 | Ultra Rare | €0.06 |
| Epurrely PlumpAmazing Defenders · 016 | Amazing Defenders | 016 | Super Rare | €0.30 |
| Equip ShotThe Duelist Genesis · 063 | The Duelist Genesis | 063 | Common | €0.05 |
| Eradicating AerosolGold Series 4: Pyramids Edition · 034 | Gold Series 4: Pyramids Edition | 034 | Common | €0.07 |
| Eradicator Epidemic VirusForce of the Breaker · 068 | Force of the Breaker | 068 | Secret Rare | €0.04 |